Initial port to python3

[htsworkflow.git] / htsworkflow / submission / ucsc.py

diff --git a/htsworkflow/submission/ucsc.py b/htsworkflow/submission/ucsc.py
index f7734adbd972b26db9150b155a7cdeb39818e0c1..3fd83484096858207be4a7e056a56632ae049bb7 100644 (file)
--- a/htsworkflow/submission/ucsc.py
+++ b/htsworkflow/submission/ucsc.py
@@ -1,8 +1,8 @@
 """Utilities for extracting information from the ENCODE DCC
 """
 import logging
-import urlparse
-import urllib2
+import urllib.parse
+import urllib.request, urllib.error, urllib.parse
 
 LOGGER = logging.getLogger(__name__)
 
@@ -21,7 +21,7 @@ def ddf_download_url(submission_id):
     'http://encodesubmit.ucsc.edu/pipeline/download_ddf/1234'
     """
     fragment = 'download_ddf/%s' % (submission_id,)
-    return urlparse.urljoin(UCSCEncodePipeline, fragment)
+    return urllib.parse.urljoin(UCSCEncodePipeline, fragment)
 
 
 def daf_download_url(submission_id):
@@ -31,7 +31,7 @@ def daf_download_url(submission_id):
     'http://encodesubmit.ucsc.edu/pipeline/download_daf/1234'
     """
     fragment = 'download_daf/%s' % (submission_id,)
-    return urlparse.urljoin(UCSCEncodePipeline, fragment)
+    return urllib.parse.urljoin(UCSCEncodePipeline, fragment)
 
 
 def submission_view_url(submission_id):
@@ -41,7 +41,7 @@ def submission_view_url(submission_id):
     'http://encodesubmit.ucsc.edu/pipeline/show/1234'
     """
     fragment = 'show/%s' % (submission_id,)
-    return urlparse.urljoin(UCSCEncodePipeline, fragment)
+    return urllib.parse.urljoin(UCSCEncodePipeline, fragment)
 
 
 def get_encodedcc_file_index(genome, composite):
@@ -58,10 +58,10 @@ def get_encodedcc_file_index(genome, composite):
         request_url = base_url + 'files.txt'
 
         try:
-            request = urllib2.urlopen(request_url)
+            request = urllib.request.urlopen(request_url)
             file_index = parse_ucsc_file_index(request, base_url)
             return file_index
-        except urllib2.HTTPError, e:
+        except urllib.error.HTTPError as e:
             err = e
             pass