PREFIX ucscDaf: <http://jumpgate.caltech.edu/wiki/UcscDaf#>
PREFIX ncbiTaxon: <http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?id=>
PREFIX geoSoft: <http://www.ncbi.nlm.nih.gov/geo/info/soft2.html#>
+PREFIX dc: <http://purl.org/dc/elements/1.1/>
-select distinct ?filename, ?md5sum, ?file_type ?file_type_label
+select distinct ?filename, ?md5sum, ?file_type ?file_type_label ?flowcell_id ?read_length ?flowcell_type ?image_software ?image_version ?basecall_software ?basecall_version ?sequencer_model
WHERE {
<{{submission}}> ucscDaf:has_file ?file ;
+ submissionOntology:library ?library ;
a submissionOntology:submission .
?file ucscDaf:filename ?filename ;
?file_type a <{{file_class}}> ;
geoSoft:fileTypeLabel ?file_type_label .
+ OPTIONAL { ?file dc:source ?source_file .
+ ?source_file libraryOntology:flowcell ?flowcell .
+ ?flowcell libraryOntology:flowcell_id ?flowcell_id ;
+ libraryOntology:read_length ?read_length ;
+ libraryOntology:flowcell_type ?flowcell_type ;
+ libraryOntology:image_software ?image_software ;
+ libraryOntology:image_version ?image_version ;
+ libraryOntology:basecall_software ?basecall_software ;
+ libraryOntology:basecall_version ?basecall_version ;
+ libraryOntology:sequenced_by ?sequencer .
+ ?sequencer libraryOntology:sequencer_model ?sequencer_model
+ }
}
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