Start developing GEO SOFT submission tool.

[htsworkflow.git] / htsworkflow / templates / geo_submission.soft

diff --git a/htsworkflow/templates/geo_submission.soft b/htsworkflow/templates/geo_submission.soft
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+Soft template
+!Platform_title = Illumina Genome Analyzer (Homo sapiens)
+!Platform_geo_accession = GPL9052
+{% for sample in samples %}{% for row in sample %}{%if forloop.first %}
+^SAMPLE={{row.name}}
+!Sample_title={{row.name}}
+!Sample_organism_ch1 = {{ row.species_name }}
+!Sample_taxid_ch1 = {{ row.taxon_id }}
+{% spaceless %}{% if row.cell %}!Sample_characteristics_ch1 = cell: {{ row.cell }}
+{% endif %}{% endspaceless %}{% endif %}
+!Sample_supplementary_file_{{forloop.counter}}={{row.filename}}{% endfor %}{% endfor %}
\ No newline at end of file