add replaces / replace_reason generation to trackhub manifest

[htsworkflow.git] / htsworkflow / templates / manifest.txt

diff --git a/htsworkflow/templates/manifest.txt b/htsworkflow/templates/manifest.txt
index adf055457f53d68f9ead81906614cd4415641c53..c81259cb77949fdffccb321f59e93634fc5e1540 100644 (file)
--- a/htsworkflow/templates/manifest.txt
+++ b/htsworkflow/templates/manifest.txt
@@ -1,2 +1,2 @@
-#file_name     format  output_type     experiment      replicate       enriched_in     ucsc_db{% for r in files %}
-{{ r.relative_path }}  {{ r.file_format }}     {{ r.output_type }}     {{ r.dataset_id }}      {{ r.replicate }}       {{ r.enriched_in }}     {{ r.ucsc_db }}{% endfor %}
+#file_name     format  output_type     experiment      replicate       enriched_in     ucsc_db replaces        replace_reason{% for r in files %}
+{{ r.relative_path }}  {{ r.file_format }}     {{ r.output_type }}     {{ r.dataset_id }}      {{ r.replicate }}       {{ r.enriched_in }}     {{ r.ucsc_db }} {{ r.replaces_accession|default_if_none:"" }}   {{ r.replace_reason|default_if_none:"" }}{% endfor %}