Generate manifest.txt files for submitting to ENCODE3.

[htsworkflow.git] / htsworkflow / templates / trackhub_term_values.sparql

diff --git a/htsworkflow/templates/trackhub_term_values.sparql b/htsworkflow/templates/trackhub_term_values.sparql
new file mode 100644 (file)
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+++ b/htsworkflow/templates/trackhub_term_values.sparql
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+PREFIX htswlib: <http://jumpgate.caltech.edu/wiki/LibraryOntology#>
+PREFIX submissionOntology: <http://jumpgate.caltech.edu/wiki/UcscSubmissionOntology#>
+PREFIX ucscDaf: <http://jumpgate.caltech.edu/wiki/UcscDaf#>
+PREFIX ncbiTaxon: <http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?id=>
+PREFIX geoSoft: <http://www.ncbi.nlm.nih.gov/geo/info/soft2.html#>
+PREFIX cells: <http://encodewiki.ucsc.edu/EncodeDCC/index.php/Cell_lines#>
+PREFIX encode3: <http://jumpgate.caltech.edu/wiki/Encode3#>
+
+select distinct ?name
+where
+{
+  ?library a htswlib:Library ;
+           {{term}} ?name.
+}