Port rdfhelp to rdflib from redland librdf.

[htsworkflow.git] / htsworkflow / util / rdfns.py

diff --git a/htsworkflow/util/rdfns.py b/htsworkflow/util/rdfns.py
index 2ad363277da2c46c40eeb758403aa539266bdb7d..979b31f0384f22050128a1fed2fc8234fe999e88 100644 (file)
--- a/htsworkflow/util/rdfns.py
+++ b/htsworkflow/util/rdfns.py
@@ -2,25 +2,20 @@
 
 All in one place to make import rdfns.* work safely
 """
-from RDF import NS
+from rdflib import Namespace
+from rdflib.namespace  import (DC, RDF, RDFS, OWL, XMLNS, XSD)
 
 # standard ontology namespaces
-rdfNS = NS("http://www.w3.org/1999/02/22-rdf-syntax-ns#")
-rdfsNS = NS("http://www.w3.org/2000/01/rdf-schema#")
-owlNS = NS('http://www.w3.org/2002/07/owl#')
-dcNS = NS("http://purl.org/dc/elements/1.1/")
-xmlNS = NS('http://www.w3.org/XML/1998/namespace')
-xsdNS = NS("http://www.w3.org/2001/XMLSchema#")
-vsNS = NS('http://www.w3.org/2003/06/sw-vocab-status/ns#')
-wotNS = NS('http://xmlns.com/wot/0.1/')
+VS = Namespace('http://www.w3.org/2003/06/sw-vocab-status/ns#')
+WOT = Namespace('http://xmlns.com/wot/0.1/')
 
 # internal ontologies
-submissionOntology = NS(
+submissionOntology = Namespace(
     "http://jumpgate.caltech.edu/wiki/UcscSubmissionOntology#")
-dafTermOntology = NS("http://jumpgate.caltech.edu/wiki/UcscDaf#")
-libraryOntology = NS("http://jumpgate.caltech.edu/wiki/LibraryOntology#")
-inventoryOntology = NS(
+dafTermOntology = Namespace("http://jumpgate.caltech.edu/wiki/UcscDaf#")
+libraryOntology = Namespace("http://jumpgate.caltech.edu/wiki/LibraryOntology#")
+inventoryOntology = Namespace(
     "http://jumpgate.caltech.edu/wiki/InventoryOntology#")
-submissionLog = NS("http://jumpgate.caltech.edu/wiki/SubmissionsLog/")
-geoSoftNS = NS('http://www.ncbi.nlm.nih.gov/geo/info/soft2.html#')
-encode3NS = NS("http://jumpgate.caltech.edu/wiki/Encode3#")
+submissionLog = Namespace("http://jumpgate.caltech.edu/wiki/SubmissionsLog/")
+geoSoftNS = Namespace('http://www.ncbi.nlm.nih.gov/geo/info/soft2.html#')
+encode3NS = Namespace("http://jumpgate.caltech.edu/wiki/Encode3#")