import sys
import os
+from htsworkflow.util.opener import autoopen
from htsworkflow.util.makebed import make_bed_from_eland_stream, make_bed_from_multi_eland_stream, make_description
def make_parser():
if options.inname == '-':
instream = sys.stdin
elif os.path.exists(options.inname):
- instream = open(options.inname, 'r')
+ instream = autoopen(options.inname, 'r')
else:
parser.error('%s was not found' % (options.inname))
return 1