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Default to sequencing if we don't have a genome for the provided
[htsworkflow.git]
/
scripts
/
retrieve_config
diff --git
a/scripts/retrieve_config
b/scripts/retrieve_config
index 9e8ccf53b6c21f911bccaa976e532587016b244f..e4fdff1fad42122e6a20b0f678f9660aed9c5809 100644
(file)
--- a/
scripts/retrieve_config
+++ b/
scripts/retrieve_config
@@
-13,6
+13,11
@@
def main(argv=None):
#Display help if no args are presented
options = getCombinedOptions(argv)
#Display help if no args are presented
options = getCombinedOptions(argv)
+
+ if options.verbose:
+ logging.basicConfig(level=logging.DEBUG)
+ else:
+ logging.basicConfig(level=logging.INFO)
msg_list = ['ERROR MESSAGES:']
if options.flowcell is None:
msg_list = ['ERROR MESSAGES:']
if options.flowcell is None:
@@
-35,5
+40,4
@@
def main(argv=None):
return 0
if __name__ == "__main__":
return 0
if __name__ == "__main__":
- logging.basicConfig(level=logging.INFO)
sys.exit(main(sys.argv[1:]))
sys.exit(main(sys.argv[1:]))