add --extract-results to scripts/runfolder

[htsworkflow.git] / scripts / runfolder

diff --git a/scripts/runfolder b/scripts/runfolder
index af89015a86e4854d2ab89c982cc03b3fbb0cba9f..d54bf60f3ce9734fcfe5644b6b9e1201ca18e344 100644 (file)
--- a/scripts/runfolder
+++ b/scripts/runfolder
@@ -46,6 +46,9 @@ def make_parser():
     parser.add_option('-a', '--archive', dest='archive', action='store_true',
                       default=False,
                       help='generate run configuration archive')
+    parser.add_option('--extract-results', action='store_true',
+           default=False,
+           help='extract result files out of runfolder into a simpler archive')
     parser.add_option('--run-xml', dest='run_xml',
            default=None,
            help='specify a run_<FlowCell>.xml file for summary reports')
@@ -73,6 +76,8 @@ def main(cmdlist=None):
             print runfolder.summary_report(runs)
         if opt.archive:
             runfolder.extract_run_parameters(runs)
+        if opt.extract_results:
+            runfolder.extract_results(runs)
 
     return 0