from setuptools import setup
+from version import get_git_version
setup(
- name="gaworkflow",
- description="some bots and other utilities to help deal with data from an illumina sequencer",
- author="Diane Trout & Brandon King",
- author_email="diane@caltech.edu",
- packages=["gaworkflow",
- "gaworkflow.pipeline",
- "gaworkflow.frontend",
- "gaworkflow.frontend.fctracker",
- "gaworkflow.frontend.eland_config"
- ],
- scripts=['scripts/spoolwatcher',
- 'scripts/copier',
- 'scripts/runner',
- 'scripts/retrieve_config',
- 'scripts/configure_pipeline',
- 'scripts/runfolder'],
-)
+ name="htsworkflow",
+ version=get_git_version(),
+ description="Utilities to help manage high-through-put sequencing",
+ author="Diane Trout, Brandon King",
+ author_email="diane@caltech.edu",
+ packages=["htsworkflow",
+ "htsworkflow.automation",
+ "htsworkflow.pipelines",
+ "htsworkflow.util",
+ # django site
+ "htsworkflow.frontend",
+ "htsworkflow.frontend.analysis",
+ "htsworkflow.frontend.eland_config",
+ "htsworkflow.frontend.experiments",
+ "htsworkflow.frontend.inventory",
+ "htsworkflow.frontend.reports",
+ "htsworkflow.frontend.samples",
+ ],
+ scripts=[
+ "scripts/htsw-copier",
+ "scripts/htsw-eland2bed",
+ "scripts/htsw-elandseq",
+ "scripts/htsw-gerald2bed",
+ "scripts/htsw-get-config",
+ "scripts/htsw-qseq2fastq",
+ "scripts/htsw-record-runfolder",
+ "scripts/htsw-runfolder",
+ "scripts/htsw-runner",
+ "scripts/htsw-spoolwatcher",
+ "scripts/htsw-srf",
+ "scripts/htsw-srf2fastq",
+ "scripts/htsw-update-archive",
+ "scripts/htsw-validate",
+ ],
+ )