X-Git-Url: http://woldlab.caltech.edu/gitweb/?p=htsworkflow.git;a=blobdiff_plain;f=htsworkflow%2Fsubmission%2Fcondorfastq.py;h=b6c22348f581f5148eeaa33cacfafe65f6ebc963;hp=ffbd8e0704356f4798d2dfb3790734bdcc782c9c;hb=3101ecf2c080bff9e424ad11f4e153546d6723b5;hpb=10c9e90168dae0d301ee6b6ba4afd99b295782f5

diff --git a/htsworkflow/submission/condorfastq.py b/htsworkflow/submission/condorfastq.py
index ffbd8e0..b6c2234 100644
--- a/htsworkflow/submission/condorfastq.py
+++ b/htsworkflow/submission/condorfastq.py
@@ -220,8 +220,6 @@ WHERE {
         Also update model with link between illumina result files
         and our target fastq file.
         """
-        fastq_paired_template = '%(lib_id)s_%(flowcell)s_c%(cycle)s_l%(lane)s_r%(read)s.fastq'
-        fastq_single_template = '%(lib_id)s_%(flowcell)s_c%(cycle)s_l%(lane)s.fastq'
         # find what targets we're missing
         needed_targets = {}
         for seq in raw_files: