X-Git-Url: http://woldlab.caltech.edu/gitweb/?p=htsworkflow.git;a=blobdiff_plain;f=htsworkflow%2Fsubmission%2Ftest%2Ftest_results.py;fp=htsworkflow%2Fsubmission%2Ftest%2Ftest_results.py;h=e4d28cfd20c1da4f5b5a642f4b02511c808a08b0;hp=b7d6accd73af229fe12ac43dd3db07785a5c8740;hb=2816ef120f54daaf9ef5d6f70bb19e379f5ab955;hpb=fbebf34fa2f5842a2ab1eb8319176c82587fe3bb diff --git a/htsworkflow/submission/test/test_results.py b/htsworkflow/submission/test/test_results.py index b7d6acc..e4d28cf 100644 --- a/htsworkflow/submission/test/test_results.py +++ b/htsworkflow/submission/test/test_results.py @@ -1,27 +1,12 @@ #!/usr/bin/env python -import copy -import os from pprint import pprint import shutil -import tempfile from unittest2 import TestCase, defaultTestLoader from htsworkflow.submission.results import ResultMap - -S1_NAME = '1000-sample' -S2_NAME = '2000-sample' - -S1_FILES = [ - os.path.join(S1_NAME, 'file1_l8_r1.fastq'), - os.path.join(S1_NAME, 'file1_l8_r2.fastq'), -] - -S2_FILES = [ - os.path.join(S2_NAME, 'file1.bam'), - os.path.join(S2_NAME, 'file1_l5.fastq'), -] +from submission_test_common import * def generate_sample_results_tree(obj): obj.tempdir = tempfile.mkdtemp(prefix="results_test") @@ -42,6 +27,7 @@ def generate_sample_results_tree(obj): stream.write(f) stream.close() + class TestResultMap(TestCase): def setUp(self): generate_sample_results_tree(self)