X-Git-Url: http://woldlab.caltech.edu/gitweb/?p=htsworkflow.git;a=blobdiff_plain;f=htsworkflow%2Fsubmission%2Ftrackhub_submission.py;h=3aa4a96ae26fa96c44e0c0f58c67503890fe38dc;hp=131bb15b3d215c50fe2c104b75b72b968a3b4a03;hb=d1c136d5dd5f0258dc9aad30c61c6a583eda5dd6;hpb=1000ba383f47a9c3ab422f4552b3725038c96541 diff --git a/htsworkflow/submission/trackhub_submission.py b/htsworkflow/submission/trackhub_submission.py index 131bb15..3aa4a96 100644 --- a/htsworkflow/submission/trackhub_submission.py +++ b/htsworkflow/submission/trackhub_submission.py @@ -120,9 +120,9 @@ class TrackHubSubmission(Submission): 'long_label': str(track_label), 'subgroups': track_subgroup, } - - LOGGER.debug('track attributes: %s', pformat(attributes)) - newtrack = Track(**attributes) + + LOGGER.debug('track attributes: %s', pformat(attributes)) + newtrack = Track(**attributes) view.add_tracks([newtrack]) results = hub.render() @@ -185,10 +185,10 @@ class TrackHubSubmission(Submission): value = self.sanitize_name(track[k]) track_subgroups[k] = value return track_subgroups - + def make_track_type(self, track): """Further annotate tracktype. - + bigWig files can have additional information. Add it if we can """ track_type = track['file_type']