X-Git-Url: http://woldlab.caltech.edu/gitweb/?p=htsworkflow.git;a=blobdiff_plain;f=htsworkflow%2Ftemplates%2Fsplit_fastq.condor;fp=htsworkflow%2Ftemplates%2Fsplit_fastq.condor;h=faca698ba64909e81cf77d35321e06e8968f4131;hp=127a9c0122edd4351728d62c4b85d129c617bc26;hb=4db6d9f86b96b7b289dc9e6a15b1379418c865ea;hpb=3101ecf2c080bff9e424ad11f4e153546d6723b5

diff --git a/htsworkflow/templates/split_fastq.condor b/htsworkflow/templates/split_fastq.condor
index 127a9c0..faca698 100644
--- a/htsworkflow/templates/split_fastq.condor
+++ b/htsworkflow/templates/split_fastq.condor
@@ -6,6 +6,6 @@ log={{ logdir }}/fastq.log
 {% if env %}environment="{{env}}"{% endif %}
 
 {% for arg in args %}
-arguments="{{ arg.pyscript }} -o {{ arg.target }} {% for s in arg.sources %}{{ s }} {% endfor %}"
+arguments="{{ arg.pyscript }} {{ arg.compression }} -o {{ arg.target }} {% for s in arg.sources %}{{ s }} {% endfor %}"
 queue
 {% endfor %}