X-Git-Url: http://woldlab.caltech.edu/gitweb/?p=htsworkflow.git;a=blobdiff_plain;f=htsworkflow%2Ftemplates%2Ftrackhub_manifest.sparql;h=36e57fa88fd0aa21f5cfbf0492b1e2e77365c57b;hp=cb5c4fd5195b87302ddd6236f19ea2b16339f8cf;hb=805338420063c86eda5fe13c566b7eb8c2a650b7;hpb=0d8dbe0fe4d0fdb5bdd40e030ab34365de8ee66f

diff --git a/htsworkflow/templates/trackhub_manifest.sparql b/htsworkflow/templates/trackhub_manifest.sparql
index cb5c4fd..36e57fa 100644
--- a/htsworkflow/templates/trackhub_manifest.sparql
+++ b/htsworkflow/templates/trackhub_manifest.sparql
@@ -6,7 +6,7 @@ PREFIX ncbiTaxon: <http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?id=>
 PREFIX geoSoft: <http://www.ncbi.nlm.nih.gov/geo/info/soft2.html#>
 PREFIX cells: <http://encodewiki.ucsc.edu/EncodeDCC/index.php/Cell_lines#>
 
-select distinct ?name ?filename ?relative_path ?file_format ?output_type ?dataset_id ?replicate ?enriched_in ?ucsc_db ?replaces_accession ?replace_reason
+select distinct ?name ?filename ?relative_path ?file_format ?output_type ?dataset_id ?replicate ?enriched_in ?ucsc_db ?paired_end ?technical_replicate ?replaces ?replace_reason
 WHERE {
   <{{submission}}> a submissionOntology:submission ;
                    submissionOntology:name ?name ;
@@ -23,6 +23,9 @@ WHERE {
 
   ?fileClass geoSoft:fileTypeLabel ?file_format ;
              ucscDaf:output_type ?output_type .
+  OPTIONAL { ?fileClass ucscDaf:paired_end ?paired_end . }
+  OPTIONAL { ?fileClass ucscDaf:technical_replicate ?technical_replicate . }
+
   
   ?library htswlib:replicate ?replicate ;
            ucscDaf:enriched_in ?enriched_in;