X-Git-Url: http://woldlab.caltech.edu/gitweb/?p=htsworkflow.git;a=blobdiff_plain;f=htsworkflow%2Futil%2Ffctracker.py;h=5ba33892f741213bb1932292e5821551df379295;hp=57b5dcfa647a1815a28c9cd0b08a216ecdef3302;hb=5f7686d4198d14e7b42e3db131c07ac0263bee1b;hpb=83d11649b502b1a8039f1a71dd92ce2e76a38189 diff --git a/htsworkflow/util/fctracker.py b/htsworkflow/util/fctracker.py index 57b5dcf..5ba3389 100644 --- a/htsworkflow/util/fctracker.py +++ b/htsworkflow/util/fctracker.py @@ -81,8 +81,8 @@ class fctracker: attach the library dictionary to the instance """ self.library = self._make_dict_from_table( - 'fctracker_library', - 'library_id') + 'samples_library', + 'id') def _get_species(self): @@ -90,7 +90,7 @@ class fctracker: attach the species dictionary to the instance """ self.species = self._make_dict_from_table( - 'fctracker_species', + 'samples_species', 'id' ) @@ -106,7 +106,7 @@ class fctracker: where = "" self.flowcells = {} c = self.conn.cursor() - c.execute('select * from fctracker_flowcell %s;' % (where)) + c.execute('select * from experiments_flowcell %s;' % (where)) # extract just the field name description = [ f[0] for f in c.description ] for row in c: