X-Git-Url: http://woldlab.caltech.edu/gitweb/?p=htsworkflow.git;a=blobdiff_plain;f=htsworkflow%2Futil%2Fmakebed.py;h=c9383fed050e03dde1f62933ece42afdbab0c20b;hp=e82968aeda34997ccd83c209d8c894279362438a;hb=6dec5144314928dd702c76543bd762235d0ad2ad;hpb=646783204499645dfdaacaf8db28fc39de98fd90

diff --git a/htsworkflow/util/makebed.py b/htsworkflow/util/makebed.py
index e82968a..c9383fe 100755
--- a/htsworkflow/util/makebed.py
+++ b/htsworkflow/util/makebed.py
@@ -98,7 +98,7 @@ def make_bed_from_multi_eland_stream(
       outstream.write(lane)
 
 def make_bed_from_multi_eland_generator(instream, name, description, chr_prefix, max_reads=255):
-  loc_pattern = '(?P<fullloc>(?P<start>[0-9]+)(?P<dir>[FR])(?P<count>[0-9]+))'
+  loc_pattern = '(?P<fullloc>(?P<start>[0-9]+)(?P<dir>[FR])(?P<count>[0-9AGCT]+))'
   other_pattern = '(?P<chr>[^:,]+)'
   split_re = re.compile('(%s|%s)' % (loc_pattern, other_pattern))