X-Git-Url: http://woldlab.caltech.edu/gitweb/?p=htsworkflow.git;a=blobdiff_plain;f=scripts%2Fqseq2fastq;h=42628980d4f8b78809791ebd9bff1df92a3280c6;hp=56589ee0c7d00322f03455aa5eb3de2df64c19f4;hb=13c4ee0105fd6eb935525130ffca96a4c69bc191;hpb=1ad7bb0976cad40d628cb59f8ed24b7b5947c725

diff --git a/scripts/qseq2fastq b/scripts/qseq2fastq
index 56589ee..4262898 100644
--- a/scripts/qseq2fastq
+++ b/scripts/qseq2fastq
@@ -56,13 +56,14 @@ def qseq2fastq(destination, qseqs, trim=None):
             
             pass_qc = record[10]
 
-            destination.write('@%s_%s:%s:%s:%s:%s pf=%s%s' % ( \
+            destination.write('@%s_%s:%s:%s:%s:%s/%s pf=%s%s' % ( \
                 machine_name,
                 run_number,
                 lane_number,
                 tile,
                 x,
                 y,
+                read,
                 pass_qc,
                 os.linesep))
             destination.write(sequence[trim])