X-Git-Url: http://woldlab.caltech.edu/gitweb/?p=htsworkflow.git;a=blobdiff_plain;f=setup.py;h=f37b3addaf734b2c22fcaf3aa73c655cc426ca23;hp=40ee4eb6e1dd42e208c2d0694327262abd162068;hb=HEAD;hpb=d54966c2fa6a5a6d4ed6eeb639e942b9a9d106cb

diff --git a/setup.py b/setup.py
index 40ee4eb..f37b3ad 100644
--- a/setup.py
+++ b/setup.py
@@ -1,37 +1,44 @@
-from setuptools import setup
+from setuptools import setup, find_packages
+from version import get_git_version
 
 setup(
-  name="htsworkflow",
-  description="some bots and other utilities to help deal with data from an illumina sequencer",
-  author="Diane Trout & Brandon King",
-  author_email="diane@caltech.edu",
-  packages=["htsworkflow", 
-            "htsworkflow.pipelines",
-            "htsworkflow.frontend",
-            "htsworkflow.frontend.analysis",
-            "htsworkflow.frontend.eland_config",
-            "htsworkflow.frontend.experiments",
-            "htsworkflow.frontend.inventory",
-            "htsworkflow.frontend.reports",
-            "htsworkflow.frontend.samples",
-            "htsworkflow.automation",
-            "htsworkflow.util"
-             ],
-  scripts=[
-        'scripts/configure_pipeline',
-        'scripts/copier',
-        'scripts/gerald2bed.py',
-        'scripts/library.py',
-        'scripts/makebed',
-	'scripts/make-library-tree',
-        'scripts/mark_archived_data',
-        'scripts/qseq2fastq',
-        'scripts/rerun_eland.py',
-        'scripts/retrieve_config',
-        'scripts/runfolder',
-        'scripts/runner',
-        'scripts/spoolwatcher', 
-        'scripts/srf',
-	'scripts/srf2named_fastq.py'
-        ],
+    name="htsworkflow",
+    version=get_git_version(),
+    description="Utilities to help manage high-through-put sequencing",
+    author="Diane Trout, Brandon King",
+    author_email="diane@caltech.edu",
+    packages=find_packages(),
+    scripts=[
+        "scripts/htsw-copier",
+        "scripts/htsw-eland2bed",
+        "scripts/htsw-elandseq",
+        "scripts/htsw-gerald2bed",
+        "scripts/htsw-get-config",
+        "scripts/htsw-qseq2fastq",
+        "scripts/htsw-record-runfolder",
+        "scripts/htsw-runfolder",
+        "scripts/htsw-runner",
+        "scripts/htsw-spoolwatcher",
+        "scripts/htsw-srf",
+        "scripts/htsw-srf2fastq",
+        "scripts/htsw-update-archive",
+        "scripts/htsw-validate",
+    ],
+    # I should be using one or the other package import
+    package_data = {
+        '': ['*.turtle']
+        },
+    include_package_data=True,
+    install_requires=['distribute',
+                      'django >=1.6, <1.7',
+                      'lxml >= 2.2.4',
+                      'numpy >= 1.3',
+                      'benderjab >= 0.2',
+                      'httplib2',
+                      'keyring',
+                      'PyLD',
+                      'requests',
+                      # This dependency is redland librdf, which doesn't have a public egg
+                      #'librdf >= 1.0.14',
+    ],
 )