Add module to convert multiple fastq files into a single file.
authorDiane Trout <diane@caltech.edu>
Tue, 6 Mar 2012 21:32:28 +0000 (13:32 -0800)
committerDiane Trout <diane@caltech.edu>
Tue, 6 Mar 2012 21:32:28 +0000 (13:32 -0800)
commit144a9cb83097965e05ac5e0718791b0855700697
treebaa22855e924c6f65502f5d3815d6302e42be746
parent73d7957501834b6c0c118f9c71ffdefee9f9c6b2
Add module to convert multiple fastq files into a single file.

The HiSeq likes to produce N seperate fastq files to simplify
parallel processing.

Also I decided to split out the parse_slice code into a
util module since it was being shared between the desplit_fastq
and qseq2fastq.

Finally just for fun I ran these two modules through pep8.py
and pylint.py and cleaned up those errors
htsworkflow/pipelines/desplit_fastq.py [new file with mode: 0644]
htsworkflow/pipelines/qseq2fastq.py
htsworkflow/pipelines/test/test_qseq2fastq.py [deleted file]
htsworkflow/util/conversion.py
htsworkflow/util/test/test_conversion.py [new file with mode: 0644]