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(parent: 9d8669e) | patch
Extend htsworkflow.pipelines.sequences to also try to figure out the cycle count.
authorDiane Trout <diane@caltech.edu>
Thu, 10 Jun 2010 00:55:10 +0000 (00:55 +0000)
committerDiane Trout <diane@caltech.edu>
Thu, 10 Jun 2010 00:55:10 +0000 (00:55 +0000)
commit1e43073b3a6031ff8677b9da4ddbdf75ac9dc380
tree711c62bf372e7ce85eec0a19ef722626d097c5abtree | snapshot
parent9d8669e6f9d3b0143f420b220b1221ae748c8593commit | diff
Extend htsworkflow.pipelines.sequences to also try to figure out the cycle count.
In addition there is experimental code to shove the found sequences into a
sql database.

I also needed to bug fix the sequence patterns to catch the fake flowcell
ilmn200901 which wasn't matching my regexp for detecting flowcell ids.
htsworkflow/pipelines/sequences.py diff | blob | history
htsworkflow/pipelines/test/test_sequences.py diff | blob | history
htsworkflow sequencing LIMS software