Fix matching scanned sequence files to library IDs work for hiseq runs.
authorDiane Trout <diane@caltech.edu>
Fri, 31 Aug 2012 19:29:59 +0000 (12:29 -0700)
committerDiane Trout <diane@caltech.edu>
Fri, 31 Aug 2012 19:29:59 +0000 (12:29 -0700)
commit20a7487b3db5104392a70ffb62ad92a00e0057c1
tree2def84805742fc20098fbcd0cda63f7a2c41c764
parent122f85fc2dc1fb9fd7c8cfbe9b25964af9251a1a
Fix matching scanned sequence files to library IDs work for hiseq runs.
The previous version was keying off of flowcell/lane so if you
had multiple libraries from the same flowcell/lane all the sequences
would end up in one of the libraries.

Hopefully this fixes that. Though to do this I ended up changing
the whole structure of condorfastq to be based on updating an RDF model.
This depends on the sequence.py module changes of saving things to
rdf models -- and the new code to infer library ids at that layer.
htsworkflow/submission/condorfastq.py
htsworkflow/submission/test/test_condorfastq.py