Allow option to save/restore a sequence class to a RDF model.
authorDiane Trout <diane@caltech.edu>
Fri, 31 Aug 2012 19:08:08 +0000 (12:08 -0700)
committerDiane Trout <diane@caltech.edu>
Fri, 31 Aug 2012 19:16:59 +0000 (12:16 -0700)
commit3842b2c1505bf20afd802a664b6fa15e7a2036e9
treefe328c29ad39fca25fcaf22449e255feef7898d1
parent55b98ce1c743187d0b7580d116ae5994ba23a13b
Allow option to save/restore a sequence class to a RDF model.
(After doing this I started having dreams of some set of mixins
designed to persist data into different types of storage).

I also renamed the sql save to indicate that its going to a SQL
database.

Also I renamed one of my simplify Uris to stripNamespace
to make it clearer what it was actually doing.

simplify_uri just returns the end of a uri -- regardless of type.
stripNamespace removes a specific namespave from a uri.
htsworkflow/pipelines/sequences.py
htsworkflow/pipelines/test/test_sequences.py
htsworkflow/submission/geo.py
htsworkflow/util/rdfhelp.py
htsworkflow/util/test/test_rdfhelp.py