projects / htsworkflow.git / commit
? search:
summary | shortlog | log | commit | commitdiff | tree
(parent: 76bb04f) | patch
Add support for CASAVA 1.7
authorDiane Trout <diane@caltech.edu>
Fri, 10 Sep 2010 22:35:20 +0000 (22:35 +0000)
committerDiane Trout <diane@caltech.edu>
Fri, 10 Sep 2010 22:35:20 +0000 (22:35 +0000)
commit6c636058f0e4ec88f4acf6b8a77f4b99b929f16f
tree20730bdf1e1dd705f06efdfb32aad5f0a75ea64ctree | snapshot
parent76bb04f3b7559b1344b223f7b46ec5147cdd3568commit | diff
Add support for CASAVA 1.7

They stopped generating eland_extended files so I needed to parse
the export files instead.

Also more carefully test how I'm computing the U0-2 and R0-2
scores.
htsworkflow/pipelines/bustard.py diff | blob | history
htsworkflow/pipelines/eland.py diff | blob | history
htsworkflow/pipelines/test/simulate_runfolder.py diff | blob | history
htsworkflow/pipelines/test/test_eland.py [new file with mode: 0644] blob
htsworkflow/pipelines/test/test_runfolder_rta180.py [new file with mode: 0644] blob
htsworkflow/pipelines/test/testdata/61MMFAAXX_4_1_matrix.txt [new file with mode: 0755] blob
htsworkflow/pipelines/test/testdata/casava_1.7_export.txt [new file with mode: 0644] blob
htsworkflow/pipelines/test/testdata/rta_basecalls_config_1870.xml [new file with mode: 0755] blob
htsworkflow/pipelines/test/testdata/rta_intensities_config_1870.xml [new file with mode: 0755] blob
htsworkflow sequencing LIMS software