Test 1.1rc1 style runs, which unfortunately require a hack for parsing

Test 1.1rc1 style runs,	which unfortunately require a hack for parsing
the summary.htm	    files since illumina's html is invalid.
They forgot to use &lt;	when writing <=. Most web browsers will ignore
it, but	ElementTree is pickier.

Also as of this	commit the summary parsing code	still doesn't understand
paired end runs so the paired end summary file parsing tests still fail.