[project @ Download Cfg, Use genome mapper, configure, run and monitor pipeline! (Proof of concept!)]
* Now downloads config file from fctracker db
* Requires ~/.ga_frontend.conf or /etc/ga_frontend/ga_frontend.conf
to have [server_info]\nbase_host_url: http://host:port
* FIXME: flowcell and genome dir are hard coded for testing
* Uses genome mapper to update config file with local available genomes
* Requires each genome dir to have a file called _metainfo_ with:
* species|build
* Then uses that config file to configure the pipeline
* Runs the pipeline monitoring the status
* TODOs:
* Allow for specifying config file from commandline
(skipping download config step).
* Need non-hardcoded way of getting flowcell and genome base directory
* Incorperate into run daemon that listens for copy complete command
* Add feature to notify users of success and failures.