"""
-Generate settings for the Django Application.
+Django settings for wsgiexample project.
-To make it easier to customize the application the settings can be
-defined in a configuration file read by ConfigParser.
-
-The options understood by this module are (with their defaults):
-
- [frontend]
- email_host=localhost
- email_port=25
- database=<section_name>
-
- [database_name]
- engine=sqlite3
- name=/path/to/database
-
- [admins]
- #name1=email1
-
- [allowed_hosts]
- #name1=ip
- localhost=127.0.0.1
-
- [allowed_analysis_hosts]
- #name1=ip
- localhost=127.0.0.1
+For more information on this file, see
+https://docs.djangoproject.com/en/1.6/topics/settings/
+For the full list of settings and their values, see
+https://docs.djangoproject.com/en/1.6/ref/settings/
"""
-import ConfigParser
-import logging
-import os
-import shlex
-import htsworkflow
-import django
-from django.conf import global_settings
-
-from htsworkflow.util.api import make_django_secret_key
-
-HTSWORKFLOW_ROOT = os.path.abspath(os.path.split(htsworkflow.__file__)[0])
-LOGGER = logging.getLogger(__name__)
-
-# make epydoc happy
-__docformat__ = "restructuredtext en"
-def options_to_list(options, dest, section_name, option_name):
- """
- Load a options from section_name and store in a dictionary
- """
- if options.has_option(section_name, option_name):
- opt = options.get(section_name, option_name)
- dest.extend( shlex.split(opt) )
-
-def options_to_dict(dest, section_name):
- """
- Load a options from section_name and store in a dictionary
- """
- if options.has_section(section_name):
- for name in options.options(section_name):
- dest[name] = options.get(section_name, name)
-
-# define your defaults here
-options = ConfigParser.SafeConfigParser()
-
-def save_options(filename, options):
- try:
- ini_stream = open(filename, 'w')
- options.write(ini_stream)
- ini_stream.close()
- except IOError, e:
- LOGGER.debug("Error saving setting: %s" % (str(e)))
+# Build paths inside the project like this: os.path.join(BASE_DIR, ...)
+import os
+BASE_DIR = os.path.dirname(os.path.dirname(__file__))
-INI_FILE = options.read([os.path.expanduser("~/.htsworkflow.ini"),
- '/etc/htsworkflow.ini',])
-# OptionParser will use the dictionary passed into the config parser as
-# 'Default' values in any section. However it still needs an empty section
-# to exist in order to retrieve anything.
-if not options.has_section('frontend'):
- options.add_section('frontend')
-if not options.has_section('bcprinter'):
- options.add_section('bcprinter')
+# Quick-start development settings - unsuitable for production
+# See https://docs.djangoproject.com/en/1.6/howto/deployment/checklist/
+# SECURITY WARNING: keep the secret key used in production secret!
+SECRET_KEY = 'c=5&609$7)bm_u+3$2bi=ida$*a)c1(cp_0siua7uyww!1qfg_'
-# Django settings for elandifier project.
+DEFAULT_API_KEY = 'n7HsXGHIi0vp9j5u4TIRJyqAlXYc4wrH'
+# SECURITY WARNING: don't run with debug turned on in production!
DEBUG = True
-TEMPLATE_DEBUG = DEBUG
-ADMINS = []
-options_to_list(options, ADMINS, 'frontend', 'admins')
+TEMPLATE_DEBUG = True
-MANAGERS = []
-options_to_list(options, MANAGERS, 'frontend', 'managers')
+ALLOWED_HOSTS = ['jumpgate.caltech.edu']
-if options.has_option('front', 'default_pm'):
- DEFAULT_PM=int(options.get('frontend', 'default_pm'))
-else:
- DEFAULT_PM=5
+# Application definition
AUTHENTICATION_BACKENDS = (
'htsworkflow.frontend.samples.auth_backend.HTSUserModelBackend', )
CUSTOM_USER_MODEL = 'samples.HTSUser'
-EMAIL_HOST='localhost'
-if options.has_option('frontend', 'email_host'):
- EMAIL_HOST = options.get('frontend', 'email_host')
-
-EMAIL_PORT = 25
-if options.has_option('frontend', 'email_port'):
- EMAIL_PORT = int(options.get('frontend', 'email_port'))
+INSTALLED_APPS = (
+ 'django.contrib.admin',
+ 'django.contrib.auth',
+ 'django.contrib.contenttypes',
+ 'django.contrib.sessions',
+ 'django.contrib.messages',
+ 'django.contrib.staticfiles',
+ 'django.contrib.humanize',
-if options.has_option('frontend', 'notification_sender'):
- NOTIFICATION_SENDER = options.get('frontend', 'notification_sender')
-else:
- NOTIFICATION_SENDER = "noreply@example.com"
-NOTIFICATION_BCC = []
-options_to_list(options, NOTIFICATION_BCC, 'frontend', 'notification_bcc')
+ 'htsworkflow.frontend.eland_config',
+ 'htsworkflow.frontend.samples',
+ 'htsworkflow.frontend.experiments',
+ 'htsworkflow.frontend.inventory',
+ 'htsworkflow.frontend.bcmagic',
+ 'htsworkflow.frontend.labels',
+)
-if not options.has_option('frontend', 'database'):
- raise ConfigParser.NoSectionError(
- "Please define [frontend] database=<Section>")
+MIDDLEWARE_CLASSES = (
+ 'django.contrib.sessions.middleware.SessionMiddleware',
+ 'django.middleware.common.CommonMiddleware',
+ 'django.middleware.csrf.CsrfViewMiddleware',
+ 'django.contrib.auth.middleware.AuthenticationMiddleware',
+ 'django.contrib.messages.middleware.MessageMiddleware',
+ 'django.middleware.clickjacking.XFrameOptionsMiddleware',
+)
-database_section = options.get('frontend', 'database')
+TEMPLATE_DIRS = (
+ os.path.join(BASE_DIR, 'htsworkflow', 'frontend', 'templates'),
+ os.path.join(BASE_DIR, 'htsworkflow', 'templates'),
+)
-if not options.has_section(database_section):
- raise ConfigParser.NoSectionError(
- "No database=<database_section_name> defined")
+ROOT_URLCONF = 'htsworkflow.frontend.urls'
+#ROOT_URLCONF='wsgiexample.urls'
-# 'postgresql_psycopg2', 'postgresql', 'mysql', 'sqlite3' or 'ado_mssql'.
-DATABASE_ENGINE = options.get(database_section, 'engine')
-DATABASE_NAME = options.get(database_section, 'name')
-if options.has_option(database_section, 'user'):
- DATABASE_USER = options.get(database_section, 'user')
-if options.has_option(database_section, 'host'):
- DATABASE_HOST = options.get(database_section, 'host')
-if options.has_option(database_section, 'port'):
- DATABASE_PORT = options.get(database_section, 'port')
+WSGI_APPLICATION = 'htsworkflow.frontend.wsgi.application'
-if options.has_option(database_section, 'password_file'):
- password_file = options.get(database_section, 'password_file')
- DATABASE_PASSWORD = open(password_file,'r').readline()
-elif options.has_option(database_section, 'password'):
- DATABASE_PASSWORD = options.get(database_section, 'password')
+# Database
+# https://docs.djangoproject.com/en/1.6/ref/settings/#databases
DATABASES = {
'default': {
'ENGINE': 'django.db.backends.sqlite3',
- 'NAME': DATABASE_NAME,
+ 'NAME': os.path.join(BASE_DIR, 'fctracker.db'),
}
}
-# Local time zone for this installation. Choices can be found here:
-# http://www.postgresql.org/docs/8.1/static/datetime-keywords.html#DATETIME-TIMEZONE-SET-TABLE
-# although not all variations may be possible on all operating systems.
-# If running in a Windows environment this must be set to the same as your
-# system time zone.
-if options.has_option('frontend', 'time_zone'):
- TIME_ZONE = options.get('frontend', 'time_zone')
-else:
- TIME_ZONE = 'America/Los_Angeles'
+# Internationalization
+# https://docs.djangoproject.com/en/1.6/topics/i18n/
-# Language code for this installation. All choices can be found here:
-# http://www.w3.org/TR/REC-html40/struct/dirlang.html#langcodes
-# http://blogs.law.harvard.edu/tech/stories/storyReader$15
LANGUAGE_CODE = 'en-us'
-SITE_ID = 1
+TIME_ZONE = 'UTC'
-# If you set this to False, Django will make some optimizations so as not
-# to load the internationalization machinery.
USE_I18N = True
-# Absolute path to the directory that holds media.
-# Example: "/home/media/media.lawrence.com/"
-MEDIA_ROOT = os.path.join(HTSWORKFLOW_ROOT, 'frontend', 'static', '')
-
-# URL that handles the media served from MEDIA_ROOT.
-# Example: "http://media.lawrence.com"
-MEDIA_URL = '/static/'
-
-# URL prefix for static media -- CSS, JavaScript and images. Make sure to use a
-# trailing slash.
-STATIC_URL = '/media/'
-
-# Make this unique, and don't share it with anybody.
-if not options.has_option('frontend', 'secret'):
- options.set('frontend', 'secret_key', make_django_secret_key(458))
- save_options(INI_FILE[0], options)
-SECRET_KEY = options.get('frontend', 'secret_key')
-
-# some of our urls need an api key
-DEFAULT_API_KEY = 'n7HsXGHIi0vp9j5u4TIRJyqAlXYc4wrH'
-
-# List of callables that know how to import templates from various sources.
-TEMPLATE_LOADERS = (
- 'django.template.loaders.filesystem.Loader',
- 'django.template.loaders.app_directories.Loader',
-)
-
-MIDDLEWARE_CLASSES = (
- 'django.middleware.csrf.CsrfViewMiddleware',
- 'django.middleware.common.CommonMiddleware',
- 'django.contrib.sessions.middleware.SessionMiddleware',
- 'django.contrib.auth.middleware.AuthenticationMiddleware',
- 'django.contrib.messages.middleware.MessageMiddleware',
- 'django.middleware.doc.XViewMiddleware',
-)
-
-TEMPLATE_CONTEXT_PROCESSORS = global_settings.TEMPLATE_CONTEXT_PROCESSORS + (
- 'htsworkflow.frontend.thispage.thispage',
-)
-ROOT_URLCONF = 'htsworkflow.frontend.urls'
-
-TEMPLATE_DIRS = (
- # Put strings here, like "/home/html/django_templates" or "C:/www/django/templates".
- # Always use forward slashes, even on Windows.
- # Don't forget to use absolute paths, not relative paths.
- '/usr/share/python-support/python-django/django/contrib/admin/templates',
- #'/usr/lib/pymodules/python2.6/django/contrib/admin/templates/',
- os.path.join(HTSWORKFLOW_ROOT, 'frontend', 'templates'),
- os.path.join(HTSWORKFLOW_ROOT, 'templates'),
-)
-
-INSTALLED_APPS = (
- 'django.contrib.admin',
- 'django.contrib.auth',
- 'django.contrib.contenttypes',
- 'django.contrib.staticfiles',
- 'django.contrib.humanize',
- 'django.contrib.sessions',
- 'django.contrib.sites',
- 'htsworkflow.frontend.eland_config',
- 'htsworkflow.frontend.samples',
- # modules from htsworkflow branch
- 'htsworkflow.frontend.experiments',
- 'htsworkflow.frontend.analysis',
- 'htsworkflow.frontend.reports',
- 'htsworkflow.frontend.inventory',
- 'htsworkflow.frontend.bcmagic',
- 'htsworkflow.frontend.labels',
-)
-
-# Project specific settings
+USE_L10N = True
-ALLOWED_IPS={'127.0.0.1': '127.0.0.1'}
-options_to_dict(ALLOWED_IPS, 'allowed_hosts')
+USE_TZ = True
-ALLOWED_ANALYS_IPS = {'127.0.0.1': '127.0.0.1'}
-options_to_dict(ALLOWED_ANALYS_IPS, 'allowed_analysis_hosts')
-#UPLOADTO_HOME = os.path.abspath('../../uploads')
-#UPLOADTO_CONFIG_FILE = os.path.join(UPLOADTO_HOME, 'eland_config')
-#UPLOADTO_ELAND_RESULT_PACKS = os.path.join(UPLOADTO_HOME, 'eland_results')
-#UPLOADTO_BED_PACKS = os.path.join(UPLOADTO_HOME, 'bed_packs')
-# Where "results_dir" means directory with all the flowcells
-if options.has_option('frontend', 'results_dir'):
- RESULT_HOME_DIR=os.path.expanduser(options.get('frontend', 'results_dir'))
-else:
- RESULT_HOME_DIR='/tmp'
-if options.has_option('frontend', 'link_flowcell_storage_device_url'):
- LINK_FLOWCELL_STORAGE_DEVICE_URL = options.get('frontend',
- 'link_flowcell_storage_device_url')
-else:
- LINK_FLOWCELL_STORAGE_DEVICE_URL = None
-# PORT 9100 is default for Zebra tabletop/desktop printers
-# PORT 6101 is default for Zebra mobile printers
-BCPRINTER_PRINTER1_HOST = None
-if options.has_option('bcprinter', 'printer1_host'):
- BCPRINTER_PRINTER1_HOST = options.get('bcprinter', 'printer1_host')
-BCPRINTER_PRINTER1_PORT=9100
-if options.has_option('bcprinter', 'printer1_port'):
- BCPRINTER_PRINTER1_PORT = int(options.get('bcprinter', 'printer1_port'))
-BCPRINTER_PRINTER2_HOST = None
-if options.has_option('bcprinter', 'printer2_host'):
- BCPRINTER_PRINTER1_HOST = options.get('bcprinter', 'printer2_host')
-BCPRINTER_PRINTER2_PORT=9100
-if options.has_option('bcprinter', 'printer2_port'):
- BCPRINTER_PRINTER2_PORT = int(options.get('bcprinter', 'printer2_port'))
+# Static files (CSS, JavaScript, Images)
+# https://docs.djangoproject.com/en/1.6/howto/static-files/
+STATIC_URL = '/static/'
+try:
+ # allow local customizations
+ from settings_local import *
+except ImportError as e:
+ pass
\ No newline at end of file
projects / htsworkflow.git / commitdiff