From: Diane Trout <diane@caltech.edu>
Date: Wed, 18 Mar 2009 19:24:41 +0000 (+0000)
Subject: Actually we want fastq files, not scarf files
X-Git-Tag: 0.2.0.2~7
X-Git-Url: http://woldlab.caltech.edu/gitweb/?p=htsworkflow.git;a=commitdiff_plain;h=0a187c4b80c5525ac1255774c8b253939b847594

Actually we want fastq files, not scarf files
---

diff --git a/htsworkflow/frontend/eland_config/views.py b/htsworkflow/frontend/eland_config/views.py
index 31b970f..02b3f13 100644
--- a/htsworkflow/frontend/eland_config/views.py
+++ b/htsworkflow/frontend/eland_config/views.py
@@ -354,7 +354,7 @@ def getElandConfig(flowcell, regenerate=False):
     data.append('%s:ELAND_GENOME %s' % (lanes, '%%(%s)s' % (genome)))
     data.append('%s:USE_BASES %s' % (lanes, 'Y'*int(read_length)))
     
-  data.append('SEQUENCE_FORMAT --scarf')
+  data.append('SEQUENCE_FORMAT --fastq')
   
   data = '\n'.join(data)