From: Diane Trout <diane@caltech.edu>
Date: Wed, 16 Jul 2008 00:46:45 +0000 (+0000)
Subject: The older pipeline runs had a Phi-X control lane which we didn't
X-Git-Tag: stanford.caltech-merged-database-2009-jan-15~47
X-Git-Url: http://woldlab.caltech.edu/gitweb/?p=htsworkflow.git;a=commitdiff_plain;h=0bc38866f6b3bb1fcd00d2ceacf06edb2ea00642

The older pipeline runs had a Phi-X control lane which we didn't
run eland against, so the total number of eland entries in
the GERALD config.xml file was less than 8. So relax testing
that constraint.
---

diff --git a/gaworkflow/pipeline/gerald.py b/gaworkflow/pipeline/gerald.py
index 311987d..f268767 100644
--- a/gaworkflow/pipeline/gerald.py
+++ b/gaworkflow/pipeline/gerald.py
@@ -39,7 +39,7 @@ class Gerald(object):
             container = subtree.find(xml_tag)
             if container is None:
                 return None
-            if len(container.getchildren()) != LANES_PER_FLOWCELL:
+            if len(container.getchildren()) > LANES_PER_FLOWCELL:
                 raise RuntimeError('GERALD config.xml file changed')
             lanes = [x.tag.split('_')[1] for x in container.getchildren()]
             index = lanes.index(self._key)