From: Diane Trout <diane@caltech.edu>
Date: Thu, 10 Sep 2009 23:52:33 +0000 (+0000)
Subject: Report if the Summary.htm file is missing the Lane Results Summary block.
X-Git-Tag: 0.3.2~30
X-Git-Url: http://woldlab.caltech.edu/gitweb/?p=htsworkflow.git;a=commitdiff_plain;h=0e71772ada72f96a33afe6b2c49e291f06ea3feb

Report if the Summary.htm file is missing the Lane Results Summary block.
---

diff --git a/htsworkflow/pipelines/summary.py b/htsworkflow/pipelines/summary.py
index dc323ff..c5db2bc 100644
--- a/htsworkflow/pipelines/summary.py
+++ b/htsworkflow/pipelines/summary.py
@@ -1,6 +1,7 @@
 """
 Analyze the Summary.htm file produced by GERALD
 """
+import logging
 import types
 from pprint import pprint
 
@@ -186,6 +187,8 @@ class Summary(object):
         for name, end in table_names:
           if tables.has_key(name):
             self._extract_lane_results_for_end(tables, name, end)
+        else:
+            logging.warning("No Lane Results Summary Found in %s" % (pathname,))
 
     def _extract_lane_results_for_end(self, tables, table_name, end):
         """