From: diane <diane@nicodemus.caltech.edu>
Date: Wed, 16 Jan 2013 01:29:06 +0000 (-0800)
Subject: Add more entries to genome version detection map.
X-Git-Url: http://woldlab.caltech.edu/gitweb/?p=htsworkflow.git;a=commitdiff_plain;h=10b111edbe6ceb8da7d4296795857060ea831d69

Add more entries to genome version detection map.

Renamed hg19 to hg18.
Added saccer1, Anopheles_gambiae detection
---

diff --git a/htsworkflow/pipelines/genomemap.py b/htsworkflow/pipelines/genomemap.py
index fe6254e..4dbbc2d 100644
--- a/htsworkflow/pipelines/genomemap.py
+++ b/htsworkflow/pipelines/genomemap.py
@@ -77,13 +77,15 @@ def guess_genome(contig_sizes):
     # guess genome names
 
     genomes = {'chr1': {197195432: 'mm9',
-                        247249719: 'hg19',
+                        247249719: 'hg18',
                         200994015: 'galGal3',
+                        230208: 'saccer1',
                         },
                'chrI': {230218: 'sacCer3',
                         15072421: 'elegans190'},
                '1': {60348388: 'danRe6'},
-               'chr2L': { 23011544: 'dm3' },
+               'chr2L': { 23011544: 'dm3',
+                          49364326: 'Anopheles_gambiae'},
 
                }