From: Diane Trout <diane@caltech.edu>
Date: Fri, 27 Mar 2015 18:05:05 +0000 (-0700)
Subject: store flowcell name in the triple store if its known
X-Git-Url: http://woldlab.caltech.edu/gitweb/?p=htsworkflow.git;a=commitdiff_plain;h=1157f1f50858e58d204747d50e924b82044c193c

store flowcell name in the triple store if its known
---

diff --git a/htsworkflow/submission/submission.py b/htsworkflow/submission/submission.py
index ed4d898..9cd9dc8 100644
--- a/htsworkflow/submission/submission.py
+++ b/htsworkflow/submission/submission.py
@@ -34,6 +34,7 @@ class Submission(object):
         self.submissionSet = get_submission_uri(self.name)
         self.submissionSetNS = RDF.NS(str(self.submissionSet) + '#')
         self.libraryNS = RDF.NS('{0}/library/'.format(host))
+        self.flowcellNS = RDF.NS('{0}/flowcell/'.format(host))
 
         self.__view_map = None
 
@@ -195,6 +196,11 @@ class Submission(object):
                 s = RDF.Statement(fileNode, model_term, toTypedNode(value))
                 self.model.append(s)
 
+        if 'flowcell' in fqname:
+            value = self.flowcellNS[fqname['flowcell'] + '/']
+            s = RDF.Statement(fileNode, libraryOntology['flowcell'], value)
+            self.model.append(s)
+
     def add_label(self, file_type, file_node, lib_node):
         """Add rdfs:label to a file node
         """