From: Diane Trout <diane@caltech.edu>
Date: Fri, 4 Nov 2011 21:56:53 +0000 (-0700)
Subject: Lorian renamed some of the libraries, change our hard coding to match.
X-Git-Tag: v0.5.5~85
X-Git-Url: http://woldlab.caltech.edu/gitweb/?p=htsworkflow.git;a=commitdiff_plain;h=1229090770ef90ab12ca4d20a2678532d7e9f289

Lorian renamed some of the libraries, change our hard coding to match.
(Really should change to pull out of adapter type DB)
---

diff --git a/htsworkflow/submission/daf.py b/htsworkflow/submission/daf.py
index c59c45c..bed304a 100644
--- a/htsworkflow/submission/daf.py
+++ b/htsworkflow/submission/daf.py
@@ -530,9 +530,13 @@ class DAFMapper(object):
             errmsg = "%s doesn't have a library type"
             raise ModelException(errmsg % (str(libNode),))
 
-        #single = (1,3,6)
-        single = ['Single End', 'Small RNA', 'CSHL (lacking last nt)']
-        paired = ['Paired End', 'Multiplexing', 'Barcoded']
+        single = ['CSHL (lacking last nt)',
+                  'Single End (non-multiplexed)',
+                  'Small RNA (non-multiplexed)',]
+        paired = ['Barcoded Illumina',
+                  'Multiplexing',
+                  'Nextera',
+                  'Paired End (non-multiplexed)',]
         if library_type in single:
             return False
         elif library_type in paired: