From: Diane Trout <diane@caltech.edu>
Date: Tue, 1 Dec 2009 02:03:04 +0000 (+0000)
Subject: Also include the read ID in the fastq header
X-Git-Tag: 0.4.0~32
X-Git-Url: http://woldlab.caltech.edu/gitweb/?p=htsworkflow.git;a=commitdiff_plain;h=13c4ee0105fd6eb935525130ffca96a4c69bc191

Also include the read ID in the fastq header
---

diff --git a/scripts/qseq2fastq b/scripts/qseq2fastq
index 56589ee..4262898 100644
--- a/scripts/qseq2fastq
+++ b/scripts/qseq2fastq
@@ -56,13 +56,14 @@ def qseq2fastq(destination, qseqs, trim=None):
             
             pass_qc = record[10]
 
-            destination.write('@%s_%s:%s:%s:%s:%s pf=%s%s' % ( \
+            destination.write('@%s_%s:%s:%s:%s:%s/%s pf=%s%s' % ( \
                 machine_name,
                 run_number,
                 lane_number,
                 tile,
                 x,
                 y,
+                read,
                 pass_qc,
                 os.linesep))
             destination.write(sequence[trim])