From: Diane Trout Date: Thu, 6 Nov 2008 22:49:40 +0000 (+0000) Subject: Updated ipar_100 test case to deal with the using U0/1/2 vs R0/1/2 X-Git-Tag: stanford.caltech-merged-database-2009-jan-15~23 X-Git-Url: http://woldlab.caltech.edu/gitweb/?p=htsworkflow.git;a=commitdiff_plain;h=1845fb09eb2ef8a8df35cf4e52457773ff2fa6ca Updated ipar_100 test case to deal with the using U0/1/2 vs R0/1/2 (my first implementation was to just dump all of the multi reads into U0/1/2) --- diff --git a/htsworkflow/pipelines/test/test_runfolder_ipar100.py b/htsworkflow/pipelines/test/test_runfolder_ipar100.py index 4924a6b..0d546d1 100644 --- a/htsworkflow/pipelines/test/test_runfolder_ipar100.py +++ b/htsworkflow/pipelines/test/test_runfolder_ipar100.py @@ -221,7 +221,12 @@ class RunfolderTests(unittest.TestCase): self.failUnlessEqual(lane.lane_id, unicode(i)) self.failUnlessEqual(len(lane.mapped_reads), 15) self.failUnlessEqual(lane.mapped_reads['hg18/chr5.fa'], 4) - self.failUnlessEqual(lane.match_codes['U1'], 10) + self.failUnlessEqual(lane.match_codes['U0'], 1) + self.failUnlessEqual(lane.match_codes['R0'], 2) + self.failUnlessEqual(lane.match_codes['U1'], 1) + self.failUnlessEqual(lane.match_codes['R1'], 9) + self.failUnlessEqual(lane.match_codes['U2'], 0) + self.failUnlessEqual(lane.match_codes['R2'], 12) self.failUnlessEqual(lane.match_codes['NM'], 1) self.failUnlessEqual(lane.match_codes['QC'], 0)