From: Diane Trout <diane@caltech.edu>
Date: Fri, 27 Feb 2009 01:01:02 +0000 (+0000)
Subject: Only configure logging if we're being run as a script
X-Git-Tag: 0.2.0.1~13
X-Git-Url: http://woldlab.caltech.edu/gitweb/?p=htsworkflow.git;a=commitdiff_plain;h=25245ae2ced89661ccf35a1aeadb348aa460a7bc

Only configure logging if we're being run as a script
---

diff --git a/scripts/configure_pipeline b/scripts/configure_pipeline
index 5e3e7fb..0251337 100644
--- a/scripts/configure_pipeline
+++ b/scripts/configure_pipeline
@@ -6,12 +6,6 @@ from htsworkflow.pipelines.configure_run import *
 from htsworkflow.pipelines import retrieve_config as _rc
 from htsworkflow.pipelines.run_status import startCmdLineStatusMonitor
 
-logging.basicConfig(level=logging.DEBUG,
-                    format='%(asctime)s %(levelname)-8s %(message)s',
-                    datefmt='%a, %d %b %Y %H:%M:%S',
-                    #filename='pipeline_main.log',
-                    filemode='w')
-
 s_fc = re.compile('FC[0-9]+')
 
 #Turn on built-in command-line parsing.
@@ -85,4 +79,10 @@ def main(args=None):
     return 2
 
 if __name__ == "__main__":
+  logging.basicConfig(level=logging.DEBUG,
+                    format='%(asctime)s %(levelname)-8s %(message)s',
+                    datefmt='%a, %d %b %Y %H:%M:%S',
+                    #filename='pipeline_main.log',
+                    filemode='w')
+
   sys.exit(main(sys.argv[1:]))