From: Diane Trout <diane@caltech.edu>
Date: Wed, 25 Jul 2012 18:53:11 +0000 (-0700)
Subject: Actually we want to capture the unanalyzed lanes if we can...
X-Git-Url: http://woldlab.caltech.edu/gitweb/?p=htsworkflow.git;a=commitdiff_plain;h=273e9e961c4c26fae88b1e7f2e4567d304cb835c

Actually we want to capture the unanalyzed lanes if we can...
---

diff --git a/htsworkflow/pipelines/runfolder.py b/htsworkflow/pipelines/runfolder.py
index 67dc505..18a38e0 100644
--- a/htsworkflow/pipelines/runfolder.py
+++ b/htsworkflow/pipelines/runfolder.py
@@ -632,7 +632,7 @@ def save_raw_data(num_jobs, r, site, raw_format, cycle_dir):
     lanes = []
     for lane in r.gerald.lanes:
         lane_parameters = r.gerald.lanes.get(lane, None)
-        if lane_parameters is not None and lane_parameters.analysis != 'none':
+        if lane_parameters is not None:
             lanes.append(lane)
 
     run_name = srf.pathname_to_run_name(r.pathname)