From: Diane Trout <diane@ghic.org>
Date: Fri, 20 Mar 2015 23:31:53 +0000 (-0700)
Subject: Convert reads to an integer, if if it was a float in the xml.
X-Git-Url: http://woldlab.caltech.edu/gitweb/?p=htsworkflow.git;a=commitdiff_plain;h=30b4b74be30eccd15c6b883258bc585a575cda18

Convert reads to an integer, if if it was a float in the xml.

Some versions of the pipeline include a trailing .0 for read length,
this made python 3s parser unhappy. so convert to a float and then
truncate to work around the type issue.
---

diff --git a/htsworkflow/pipelines/eland.py b/htsworkflow/pipelines/eland.py
index 3298ae4..39030fa 100644
--- a/htsworkflow/pipelines/eland.py
+++ b/htsworkflow/pipelines/eland.py
@@ -620,7 +620,7 @@ class SequenceLane(ResultLane):
             elif tag == END.lower():
                 self.end = int(element.text)
             elif tag == READS.lower():
-                self._reads = int(element.text)
+                self._reads = int(float(element.text))
             elif tag == SequenceLane.SEQUENCE_TYPE.lower():
                 self.sequence_type = lookup_sequence_type.get(element.text, None)
             else: