From: Diane Trout <diane@caltech.edu>
Date: Mon, 12 May 2014 23:14:18 +0000 (-0700)
Subject: the filename templates were moved from condorfastq to fastqname a while ago
X-Git-Url: http://woldlab.caltech.edu/gitweb/?p=htsworkflow.git;a=commitdiff_plain;h=3101ecf2c080bff9e424ad11f4e153546d6723b5

the filename templates were moved from condorfastq to fastqname a while ago
---

diff --git a/htsworkflow/submission/condorfastq.py b/htsworkflow/submission/condorfastq.py
index ffbd8e0..b6c2234 100644
--- a/htsworkflow/submission/condorfastq.py
+++ b/htsworkflow/submission/condorfastq.py
@@ -220,8 +220,6 @@ WHERE {
         Also update model with link between illumina result files
         and our target fastq file.
         """
-        fastq_paired_template = '%(lib_id)s_%(flowcell)s_c%(cycle)s_l%(lane)s_r%(read)s.fastq'
-        fastq_single_template = '%(lib_id)s_%(flowcell)s_c%(cycle)s_l%(lane)s.fastq'
         # find what targets we're missing
         needed_targets = {}
         for seq in raw_files: