From: Diane Trout <diane@caltech.edu>
Date: Fri, 29 Aug 2008 16:51:23 +0000 (+0000)
Subject: insert stub clean_runs function to list roughly what I think I can
X-Git-Tag: stanford.caltech-merged-database-2009-jan-15~40
X-Git-Url: http://woldlab.caltech.edu/gitweb/?p=htsworkflow.git;a=commitdiff_plain;h=35646231a4b13e7e04b195a21b216fdba217acc6

insert stub clean_runs function to list roughly what I think I can
delete before compressing the runfolder
---

diff --git a/gaworkflow/pipeline/runfolder.py b/gaworkflow/pipeline/runfolder.py
index b72194c..65f6191 100644
--- a/gaworkflow/pipeline/runfolder.py
+++ b/gaworkflow/pipeline/runfolder.py
@@ -296,4 +296,18 @@ def extract_results(runs, output_base_dir=None):
           logging.info('Saving to %s' % (dest_name, ))
           bzip.wait()
 
-      
+def clean_runs(runs):
+    """
+    Clean up run folders to optimize for compression.
+    """
+    # TODO: implement this.
+    # rm RunLog*.xml
+    # rm pipeline_*.txt
+    # rm gclog.txt
+    # rm NetCopy.log
+    # rm nfn.log
+    # rm Images/L*
+    # cd Data/C1-*_Firecrest*
+    # make clean_intermediate
+
+    pass