From: Diane Trout <diane@caltech.edu>
Date: Mon, 11 May 2009 20:03:16 +0000 (+0000)
Subject: Fix parameter list for base class.
X-Git-Tag: 0.2.0.5~10
X-Git-Url: http://woldlab.caltech.edu/gitweb/?p=htsworkflow.git;a=commitdiff_plain;h=3a8b8280fd24d334007ddf6c728ffc1617fcf153

Fix parameter list for base class.
I was passing in the ElementTree xml into the base class constructor instead of
an integer representing which 'end' the sample is from.
Which when working with single ended ElandLanes ended up with the ElementTree node
instead of none (which showed up in the UI).
---

diff --git a/htsworkflow/pipelines/eland.py b/htsworkflow/pipelines/eland.py
index bd6864e..559a2a2 100644
--- a/htsworkflow/pipelines/eland.py
+++ b/htsworkflow/pipelines/eland.py
@@ -84,7 +84,7 @@ class ElandLane(ResultLane):
     LANE = "ElandLane"
 
     def __init__(self, pathname=None, lane_id=None, end=None, genome_map=None, eland_type=None, xml=None):
-        super(ElandLane, self).__init__(pathname, lane_id, xml)
+        super(ElandLane, self).__init__(pathname, lane_id, end)
 
         self._mapped_reads = None
         self._match_codes = None