From: Diane Trout <diane@caltech.edu>
Date: Tue, 7 Oct 2008 22:47:01 +0000 (+0000)
Subject: update imports for runfolder and eland_makebed for location in htswdataprod.
X-Git-Url: http://woldlab.caltech.edu/gitweb/?p=htsworkflow.git;a=commitdiff_plain;h=5eba4ff6c19d0cdc48ece3524520bff197b019af

update imports for runfolder and eland_makebed for location in htswdataprod.
---

diff --git a/htswdataprod/scripts/eland_makebed b/htswdataprod/scripts/eland_makebed
index a4a414b..a457297 100755
--- a/htswdataprod/scripts/eland_makebed
+++ b/htswdataprod/scripts/eland_makebed
@@ -3,7 +3,7 @@ import optparse
 import sys
 import os
 
-from gaworkflow.util.makebed import make_bed_from_eland_stream, make_bed_from_multi_eland_stream, make_description
+from htswdataprod.illumina.makebed import make_bed_from_eland_stream, make_bed_from_multi_eland_stream, make_description
 
 def make_parser():
   parser = optparse.OptionParser()
diff --git a/htswdataprod/scripts/runfolder b/htswdataprod/scripts/runfolder
index 2f76f4b..252b9bc 100644
--- a/htswdataprod/scripts/runfolder
+++ b/htswdataprod/scripts/runfolder
@@ -32,8 +32,8 @@ import optparse
 import sys
 import os
 
-from htswdataprod import runfolder
-from htswdataprod.runfolder import ElementTree
+from htswdataprod.illumina import runfolder
+from htswdataprod.illumina.runfolder import ElementTree
         
 def make_parser():
     usage = 'usage: %prog [options] runfolder_root_dir'