From: Tim Reddy Tim <treddy@hudsonalpha.org>
Date: Sat, 30 Aug 2008 00:02:32 +0000 (+0000)
Subject: Added installation notes
X-Git-Url: http://woldlab.caltech.edu/gitweb/?p=htsworkflow.git;a=commitdiff_plain;h=6afbf797025de5230ca0acf5474644afe09ac6f9

Added installation notes
---

diff --git a/htswanalysis/INSTALL_NOTES b/htswanalysis/INSTALL_NOTES
new file mode 100644
index 0000000..f5faa1a
--- /dev/null
+++ b/htswanalysis/INSTALL_NOTES
@@ -0,0 +1,26 @@
+First: LibrariesMakefile
+
+i) Set up sequence repository
+ii) Build binaries
+iii) Perl packages: XML::Simple, Statistics::Descriptive
+iv) Build reference data
+
+1) Set ROOT_DIR, DATA_DIR, and HTML_DIR in LibrariesMakefile
+
+Second: Projects/Tasks: ConfigureTasks.pm
+
+i) Build QuEST
+ii) NEED (TODO): Platform Version of BioProspector/genomebg
+iii) MACS installation
+iv) WingWong's Peak Caller (TODO: Need License)
+
+Parameters:
+my $root_dir = shift; (htswanalysis)
+my $data_dir = shift; (data repository base)
+my $parm = shift; ("all")
+
+Set url for getProjects in scripts/analys_track_comm.py
+
+.
+.
+. (this is where the felcat server crashed and burned)