From: Diane Trout <diane@caltech.edu>
Date: Sat, 8 May 2010 00:33:58 +0000 (+0000)
Subject: Matches can have trailing AGCT in addition to a number
X-Git-Tag: 0.4.0~1
X-Git-Url: http://woldlab.caltech.edu/gitweb/?p=htsworkflow.git;a=commitdiff_plain;h=6dec5144314928dd702c76543bd762235d0ad2ad

Matches can have trailing AGCT in addition to a number
---

diff --git a/htsworkflow/util/makebed.py b/htsworkflow/util/makebed.py
index e82968a..c9383fe 100755
--- a/htsworkflow/util/makebed.py
+++ b/htsworkflow/util/makebed.py
@@ -98,7 +98,7 @@ def make_bed_from_multi_eland_stream(
       outstream.write(lane)
 
 def make_bed_from_multi_eland_generator(instream, name, description, chr_prefix, max_reads=255):
-  loc_pattern = '(?P<fullloc>(?P<start>[0-9]+)(?P<dir>[FR])(?P<count>[0-9]+))'
+  loc_pattern = '(?P<fullloc>(?P<start>[0-9]+)(?P<dir>[FR])(?P<count>[0-9AGCT]+))'
   other_pattern = '(?P<chr>[^:,]+)'
   split_re = re.compile('(%s|%s)' % (loc_pattern, other_pattern))