From: Diane Trout <diane@caltech.edu>
Date: Wed, 9 Jan 2008 02:29:52 +0000 (+0000)
Subject: always trigger a copy when we receive the sequencingFinshed message
X-Git-Tag: 0.1.0~13
X-Git-Url: http://woldlab.caltech.edu/gitweb/?p=htsworkflow.git;a=commitdiff_plain;h=838fccdd58ef58cd36a26019d2f93015ee7fdfa9

always trigger a copy when we receive the sequencingFinshed message
hopefully then we'll only send sequencingFinished off to runner
when the rsyncing is well and truely finished.
---

diff --git a/gaworkflow/copier.py b/gaworkflow/copier.py
index c28ea32..2e0d3ae 100644
--- a/gaworkflow/copier.py
+++ b/gaworkflow/copier.py
@@ -184,16 +184,10 @@ class CopierBot(rpc.XmlRpcBot):
         
         # see if we're still copying
         if runfolder_validate(runDir):
-            if runDir in self.rsync.keys():
-                # still copying
-                self.pending.append(runDir)
-                logging.info("finished sequencing, but still copying" % (runDir))
-                return "PENDING"
-            else:
-                # we're done
-                self.reportSequencingFinished(runDir)
-                logging.info("finished sequencing %s" % (runDir))
-                return "DONE"
+            logging.info("recevied sequencing finshed for %s" % (runDir))
+            self.pending.append(runDir)
+            self.startCopy()
+            return "PENDING"
         else:
             errmsg = "received bad runfolder name (%s)" % (runDir)
             logging.warning(errmsg)