From: Diane Trout <diane@caltech.edu>
Date: Fri, 13 Feb 2009 01:42:06 +0000 (+0000)
Subject: use the compression handling auto-opener for our eland files
X-Git-Tag: 0.2.0.1~25
X-Git-Url: http://woldlab.caltech.edu/gitweb/?p=htsworkflow.git;a=commitdiff_plain;h=8b0fc2ca20ca8026efb18b9c7f3ac1cfa95591ed

use the compression handling auto-opener for our eland files
---

diff --git a/scripts/makebed b/scripts/makebed
index 64ba518..577b868 100755
--- a/scripts/makebed
+++ b/scripts/makebed
@@ -3,6 +3,7 @@ import optparse
 import sys
 import os
 
+from htsworkflow.util.opener import autoopen
 from htsworkflow.util.makebed import make_bed_from_eland_stream, make_bed_from_multi_eland_stream, make_description
 
 def make_parser():
@@ -61,7 +62,7 @@ def main(command_line=None):
   if options.inname == '-':
     instream = sys.stdin
   elif os.path.exists(options.inname):
-    instream = open(options.inname, 'r')
+    instream = autoopen(options.inname, 'r')
   else:
     parser.error('%s was not found' % (options.inname))
     return 1