From: Diane Trout <diane@caltech.edu>
Date: Thu, 25 Sep 2008 00:02:25 +0000 (+0000)
Subject: use _ for field seperator in srf file names. (Using a uniform seperator
X-Git-Tag: stanford.caltech-merged-database-2009-jan-15~35
X-Git-Url: http://woldlab.caltech.edu/gitweb/?p=htsworkflow.git;a=commitdiff_plain;h=96048b8d9f0b5280d8f7248dfd67784fb1079a2d

use _ for field seperator in srf file names. (Using a uniform seperator
makes it easier to process the files later. Not to mention avoiding
characters that are "special" like : is a good idea for multi-platform
compatibility)
---

diff --git a/scripts/srf b/scripts/srf
index 240cc8e..f8617ea 100644
--- a/scripts/srf
+++ b/scripts/srf
@@ -24,7 +24,7 @@ def make_commands(run_name, lanes, site_name, destdir):
   cmd_list = []
   for lane in lanes:
     name_prefix = '%s_%%l_%%t_' % (run_name,)
-    destname = '%s:%s-%d.srf' % (site_name, run_name, lane)
+    destname = '%s_%s_%d.srf' % (site_name, run_name, lane)
     destdir = os.path.normpath(destdir)
     dest_path = os.path.join(destdir, destname)
     seq_pattern = 's_%d_*_seq.txt' % (lane,)