From: Diane Trout <diane@caltech.edu>
Date: Fri, 13 Feb 2009 21:41:43 +0000 (+0000)
Subject: save longer comment describing change
X-Git-Tag: 0.2.0.1~22
X-Git-Url: http://woldlab.caltech.edu/gitweb/?p=htsworkflow.git;a=commitdiff_plain;h=96f3f3fe25d69a185d1e925eb6532ae87e90ecad

save longer comment describing change
---

diff --git a/htsworkflow/pipelines/eland.py b/htsworkflow/pipelines/eland.py
index bdbe575..edd9036 100644
--- a/htsworkflow/pipelines/eland.py
+++ b/htsworkflow/pipelines/eland.py
@@ -127,8 +127,10 @@ class ElandLane(object):
             if groups is None:
                 match_codes[fields[2]] += 1
             else:
-                # when there are too many hit, eland writes a - where
-                # it would have put the list of hits
+                # when there are too many hit, eland  writes a - where
+                # it would have put the list of hits.
+                # or in a different version of eland, it just leaves
+                # that column blank, and only outputs 3 fields.     
                 if len(fields) < 4 or fields[3] == '-':
                   continue
                 zero_mismatches = int(groups.group(1))