From: Diane Trout <diane@caltech.edu>
Date: Thu, 19 Jul 2012 00:01:03 +0000 (-0700)
Subject: Add in a few more genomes to detection code
X-Git-Url: http://woldlab.caltech.edu/gitweb/?p=htsworkflow.git;a=commitdiff_plain;h=97e427b170f974e11bef0005415dea75de963a5e

Add in a few more genomes to detection code
---

diff --git a/htsworkflow/pipelines/genomemap.py b/htsworkflow/pipelines/genomemap.py
index f39df79..fe6254e 100644
--- a/htsworkflow/pipelines/genomemap.py
+++ b/htsworkflow/pipelines/genomemap.py
@@ -78,8 +78,13 @@ def guess_genome(contig_sizes):
 
     genomes = {'chr1': {197195432: 'mm9',
                         247249719: 'hg19',
+                        200994015: 'galGal3',
                         },
-               'chrI': {230218: 'sacCer3'},
+               'chrI': {230218: 'sacCer3',
+                        15072421: 'elegans190'},
+               '1': {60348388: 'danRe6'},
+               'chr2L': { 23011544: 'dm3' },
+
                }
 
     for key in genomes: