From: Brandon King <kingb@caltech.edu>
Date: Wed, 23 Jan 2008 00:17:14 +0000 (+0000)
Subject: Latest genome build, eland_config file temp. solution patch.
X-Git-Tag: 0.1.0~3
X-Git-Url: http://woldlab.caltech.edu/gitweb/?p=htsworkflow.git;a=commitdiff_plain;h=a11f8ed00a141c6217b258d334fa67aa30ed08e0

Latest genome build, eland_config file temp. solution patch.
 * As per Diane's suggestion, the config file being generated will only
   contain the species name, which will mean "use latest build" for
   this species. At a later time when the web UI has been updated to allow
   overriding this default and selecting a specific genome build to
   use (the species_name|build_num convention will return). See
   ticket:50 for more information.
---

diff --git a/gaworkflow/frontend/eland_config/views.py b/gaworkflow/frontend/eland_config/views.py
index 6175718..f23f7ae 100644
--- a/gaworkflow/frontend/eland_config/views.py
+++ b/gaworkflow/frontend/eland_config/views.py
@@ -316,29 +316,29 @@ def getElandConfig(flowcell, regenerate=False):
   genome_dict = {}
   
   #l1s = form['lane1_species']
-  l1s = fcObj.lane_1_library.library_species.scientific_name + '|' + \
-        fcObj.lane_1_library.library_species.use_genome_build
+  l1s = fcObj.lane_1_library.library_species.scientific_name #+ '|' + \
+        #fcObj.lane_1_library.library_species.use_genome_build
   genome_dict.setdefault(l1s, []).append('1')
-  l2s = fcObj.lane_2_library.library_species.scientific_name + '|' + \
-        fcObj.lane_2_library.library_species.use_genome_build
+  l2s = fcObj.lane_2_library.library_species.scientific_name #+ '|' + \
+        #fcObj.lane_2_library.library_species.use_genome_build
   genome_dict.setdefault(l2s, []).append('2')
-  l3s = fcObj.lane_3_library.library_species.scientific_name + '|' + \
-        fcObj.lane_3_library.library_species.use_genome_build
+  l3s = fcObj.lane_3_library.library_species.scientific_name #+ '|' + \
+        #fcObj.lane_3_library.library_species.use_genome_build
   genome_dict.setdefault(l3s, []).append('3')
-  l4s = fcObj.lane_4_library.library_species.scientific_name + '|' + \
-        fcObj.lane_4_library.library_species.use_genome_build
+  l4s = fcObj.lane_4_library.library_species.scientific_name #+ '|' + \
+        #fcObj.lane_4_library.library_species.use_genome_build
   genome_dict.setdefault(l4s, []).append('4')
-  l5s = fcObj.lane_5_library.library_species.scientific_name + '|' + \
-        fcObj.lane_5_library.library_species.use_genome_build
+  l5s = fcObj.lane_5_library.library_species.scientific_name #+ '|' + \
+        #fcObj.lane_5_library.library_species.use_genome_build
   genome_dict.setdefault(l5s, []).append('5')
-  l6s = fcObj.lane_6_library.library_species.scientific_name + '|' + \
-        fcObj.lane_6_library.library_species.use_genome_build
+  l6s = fcObj.lane_6_library.library_species.scientific_name #+ '|' + \
+        #fcObj.lane_6_library.library_species.use_genome_build
   genome_dict.setdefault(l6s, []).append('6')
-  l7s = fcObj.lane_7_library.library_species.scientific_name + '|' + \
-        fcObj.lane_7_library.library_species.use_genome_build
+  l7s = fcObj.lane_7_library.library_species.scientific_name #+ '|' + \
+        #fcObj.lane_7_library.library_species.use_genome_build
   genome_dict.setdefault(l7s, []).append('7')
-  l8s = fcObj.lane_8_library.library_species.scientific_name + '|' + \
-        fcObj.lane_8_library.library_species.use_genome_build
+  l8s = fcObj.lane_8_library.library_species.scientific_name #+ '|' + \
+        #fcObj.lane_8_library.library_species.use_genome_build
   genome_dict.setdefault(l8s, []).append('8')
   
   genome_list = genome_dict.keys()